3D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography.
Identifieur interne : 002827 ( Main/Exploration ); précédent : 002826; suivant : 0028283D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography.
Auteurs : Michael C. Martin [États-Unis] ; Charlotte Dabat-Blondeau ; Miriam Unger ; Julia Sedlmair ; Dilworth Y. Parkinson ; Hans A. Bechtel ; Barbara Illman ; Jonathan M. Castro ; Marco Keiluweit ; David Buschke ; Brenda Ogle ; Michael J. Nasse ; Carol J. HirschmuglSource :
- Nature methods [ 1548-7105 ] ; 2013.
Descripteurs français
- KwdFr :
- Animaux (MeSH), Bois (ultrastructure), Cellules souches embryonnaires (ultrastructure), Humains (MeSH), Imagerie tridimensionnelle (MeSH), Microtomographie aux rayons X (méthodes), Poils (ultrastructure), Populus (ultrastructure), Souris (MeSH), Spectroscopie infrarouge à transformée de Fourier (méthodes), Synchrotrons (MeSH), Traitement d'image par ordinateur (méthodes).
- MESH :
English descriptors
- KwdEn :
- Animals (MeSH), Embryonic Stem Cells (ultrastructure), Hair (ultrastructure), Humans (MeSH), Image Processing, Computer-Assisted (methods), Imaging, Three-Dimensional (MeSH), Mice (MeSH), Populus (ultrastructure), Spectroscopy, Fourier Transform Infrared (methods), Synchrotrons (MeSH), Wood (ultrastructure), X-Ray Microtomography (methods).
- MESH :
- methods : Image Processing, Computer-Assisted, Spectroscopy, Fourier Transform Infrared, X-Ray Microtomography.
- ultrastructure : Embryonic Stem Cells, Hair, Populus, Wood.
- Animals, Humans, Imaging, Three-Dimensional, Mice, Synchrotrons.
Abstract
We report Fourier transform infrared spectro-microtomography, a nondestructive three-dimensional imaging approach that reveals the distribution of distinctive chemical compositions throughout an intact biological or materials sample. The method combines mid-infrared absorption contrast with computed tomographic data acquisition and reconstruction to enhance chemical and morphological localization by determining a complete infrared spectrum for every voxel (millions of spectra determined per sample).
DOI: 10.1038/nmeth.2596
PubMed: 23913258
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Parkinson</name></author><author><name sortKey="Bechtel, Hans A" sort="Bechtel, Hans A" uniqKey="Bechtel H" first="Hans A" last="Bechtel">Hans A. Bechtel</name></author><author><name sortKey="Illman, Barbara" sort="Illman, Barbara" uniqKey="Illman B" first="Barbara" last="Illman">Barbara Illman</name></author><author><name sortKey="Castro, Jonathan M" sort="Castro, Jonathan M" uniqKey="Castro J" first="Jonathan M" last="Castro">Jonathan M. Castro</name></author><author><name sortKey="Keiluweit, Marco" sort="Keiluweit, Marco" uniqKey="Keiluweit M" first="Marco" last="Keiluweit">Marco Keiluweit</name></author><author><name sortKey="Buschke, David" sort="Buschke, David" uniqKey="Buschke D" first="David" last="Buschke">David Buschke</name></author><author><name sortKey="Ogle, Brenda" sort="Ogle, Brenda" uniqKey="Ogle B" first="Brenda" last="Ogle">Brenda Ogle</name></author><author><name sortKey="Nasse, Michael J" sort="Nasse, Michael J" uniqKey="Nasse M" first="Michael J" last="Nasse">Michael J. Nasse</name></author><author><name sortKey="Hirschmugl, Carol J" sort="Hirschmugl, Carol J" uniqKey="Hirschmugl C" first="Carol J" last="Hirschmugl">Carol J. 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Martin</name><affiliation wicri:level="2"><nlm:affiliation>Advanced Light Source Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA. MCMartin@lbl.gov</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Advanced Light Source Division, Lawrence Berkeley National Laboratory, Berkeley, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Dabat Blondeau, Charlotte" sort="Dabat Blondeau, Charlotte" uniqKey="Dabat Blondeau C" first="Charlotte" last="Dabat-Blondeau">Charlotte Dabat-Blondeau</name></author><author><name sortKey="Unger, Miriam" sort="Unger, Miriam" uniqKey="Unger M" first="Miriam" last="Unger">Miriam Unger</name></author><author><name sortKey="Sedlmair, Julia" sort="Sedlmair, Julia" uniqKey="Sedlmair J" first="Julia" last="Sedlmair">Julia Sedlmair</name></author><author><name sortKey="Parkinson, Dilworth Y" sort="Parkinson, Dilworth Y" uniqKey="Parkinson D" first="Dilworth Y" last="Parkinson">Dilworth Y. Parkinson</name></author><author><name sortKey="Bechtel, Hans A" sort="Bechtel, Hans A" uniqKey="Bechtel H" first="Hans A" last="Bechtel">Hans A. Bechtel</name></author><author><name sortKey="Illman, Barbara" sort="Illman, Barbara" uniqKey="Illman B" first="Barbara" last="Illman">Barbara Illman</name></author><author><name sortKey="Castro, Jonathan M" sort="Castro, Jonathan M" uniqKey="Castro J" first="Jonathan M" last="Castro">Jonathan M. Castro</name></author><author><name sortKey="Keiluweit, Marco" sort="Keiluweit, Marco" uniqKey="Keiluweit M" first="Marco" last="Keiluweit">Marco Keiluweit</name></author><author><name sortKey="Buschke, David" sort="Buschke, David" uniqKey="Buschke D" first="David" last="Buschke">David Buschke</name></author><author><name sortKey="Ogle, Brenda" sort="Ogle, Brenda" uniqKey="Ogle B" first="Brenda" last="Ogle">Brenda Ogle</name></author><author><name sortKey="Nasse, Michael J" sort="Nasse, Michael J" uniqKey="Nasse M" first="Michael J" last="Nasse">Michael J. Nasse</name></author><author><name sortKey="Hirschmugl, Carol J" sort="Hirschmugl, Carol J" uniqKey="Hirschmugl C" first="Carol J" last="Hirschmugl">Carol J. Hirschmugl</name></author></analytic><series><title level="j">Nature methods</title><idno type="eISSN">1548-7105</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Embryonic Stem Cells (ultrastructure)</term><term>Hair (ultrastructure)</term><term>Humans (MeSH)</term><term>Image Processing, Computer-Assisted (methods)</term><term>Imaging, Three-Dimensional (MeSH)</term><term>Mice (MeSH)</term><term>Populus (ultrastructure)</term><term>Spectroscopy, Fourier Transform Infrared (methods)</term><term>Synchrotrons (MeSH)</term><term>Wood (ultrastructure)</term><term>X-Ray Microtomography (methods)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux (MeSH)</term><term>Bois (ultrastructure)</term><term>Cellules souches embryonnaires (ultrastructure)</term><term>Humains (MeSH)</term><term>Imagerie tridimensionnelle (MeSH)</term><term>Microtomographie aux rayons X (méthodes)</term><term>Poils (ultrastructure)</term><term>Populus (ultrastructure)</term><term>Souris (MeSH)</term><term>Spectroscopie infrarouge à transformée de Fourier (méthodes)</term><term>Synchrotrons (MeSH)</term><term>Traitement d'image par ordinateur (méthodes)</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Image Processing, Computer-Assisted</term><term>Spectroscopy, Fourier Transform Infrared</term><term>X-Ray Microtomography</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Microtomographie aux rayons X</term><term>Spectroscopie infrarouge à transformée de Fourier</term><term>Traitement d'image par ordinateur</term></keywords><keywords scheme="MESH" qualifier="ultrastructure" xml:lang="en"><term>Embryonic Stem Cells</term><term>Hair</term><term>Populus</term><term>Wood</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Humans</term><term>Imaging, Three-Dimensional</term><term>Mice</term><term>Synchrotrons</term></keywords><keywords scheme="MESH" qualifier="ultrastructure" xml:lang="fr"><term>Animaux</term><term>Bois</term><term>Cellules souches embryonnaires</term><term>Humains</term><term>Imagerie tridimensionnelle</term><term>Poils</term><term>Populus</term><term>Souris</term><term>Synchrotrons</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We report Fourier transform infrared spectro-microtomography, a nondestructive three-dimensional imaging approach that reveals the distribution of distinctive chemical compositions throughout an intact biological or materials sample. The method combines mid-infrared absorption contrast with computed tomographic data acquisition and reconstruction to enhance chemical and morphological localization by determining a complete infrared spectrum for every voxel (millions of spectra determined per sample).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23913258</PMID><DateCompleted><Year>2014</Year><Month>01</Month><Day>06</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1548-7105</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>9</Issue><PubDate><Year>2013</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Nature methods</Title><ISOAbbreviation>Nat Methods</ISOAbbreviation></Journal><ArticleTitle>3D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography.</ArticleTitle><Pagination><MedlinePgn>861-4</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/nmeth.2596</ELocationID><Abstract><AbstractText>We report Fourier transform infrared spectro-microtomography, a nondestructive three-dimensional imaging approach that reveals the distribution of distinctive chemical compositions throughout an intact biological or materials sample. The method combines mid-infrared absorption contrast with computed tomographic data acquisition and reconstruction to enhance chemical and morphological localization by determining a complete infrared spectrum for every voxel (millions of spectra determined per sample).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Michael C</ForeName><Initials>MC</Initials><Identifier Source="ORCID">0000-0002-6611-070X</Identifier><AffiliationInfo><Affiliation>Advanced Light Source Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA. MCMartin@lbl.gov</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dabat-Blondeau</LastName><ForeName>Charlotte</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Unger</LastName><ForeName>Miriam</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Sedlmair</LastName><ForeName>Julia</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Parkinson</LastName><ForeName>Dilworth Y</ForeName><Initials>DY</Initials></Author><Author ValidYN="Y"><LastName>Bechtel</LastName><ForeName>Hans A</ForeName><Initials>HA</Initials></Author><Author ValidYN="Y"><LastName>Illman</LastName><ForeName>Barbara</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Castro</LastName><ForeName>Jonathan M</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Keiluweit</LastName><ForeName>Marco</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Buschke</LastName><ForeName>David</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Ogle</LastName><ForeName>Brenda</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Nasse</LastName><ForeName>Michael J</ForeName><Initials>MJ</Initials></Author><Author ValidYN="Y"><LastName>Hirschmugl</LastName><ForeName>Carol J</ForeName><Initials>CJ</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>08</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Nat Methods</MedlineTA><NlmUniqueID>101215604</NlmUniqueID><ISSNLinking>1548-7091</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053595" MajorTopicYN="N">Embryonic Stem Cells</DescriptorName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006197" MajorTopicYN="N">Hair</DescriptorName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007091" MajorTopicYN="N">Image Processing, Computer-Assisted</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021621" MajorTopicYN="N">Imaging, Three-Dimensional</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D051379" MajorTopicYN="N">Mice</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017550" MajorTopicYN="N">Spectroscopy, Fourier Transform Infrared</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017356" MajorTopicYN="N">Synchrotrons</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000648" MajorTopicYN="N">ultrastructure</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055114" MajorTopicYN="N">X-Ray Microtomography</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>02</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>07</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>8</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>8</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>1</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23913258</ArticleId><ArticleId IdType="pii">nmeth.2596</ArticleId><ArticleId IdType="doi">10.1038/nmeth.2596</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Phys Med Biol. 1999 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Bechtel</name><name sortKey="Buschke, David" sort="Buschke, David" uniqKey="Buschke D" first="David" last="Buschke">David Buschke</name><name sortKey="Castro, Jonathan M" sort="Castro, Jonathan M" uniqKey="Castro J" first="Jonathan M" last="Castro">Jonathan M. Castro</name><name sortKey="Dabat Blondeau, Charlotte" sort="Dabat Blondeau, Charlotte" uniqKey="Dabat Blondeau C" first="Charlotte" last="Dabat-Blondeau">Charlotte Dabat-Blondeau</name><name sortKey="Hirschmugl, Carol J" sort="Hirschmugl, Carol J" uniqKey="Hirschmugl C" first="Carol J" last="Hirschmugl">Carol J. Hirschmugl</name><name sortKey="Illman, Barbara" sort="Illman, Barbara" uniqKey="Illman B" first="Barbara" last="Illman">Barbara Illman</name><name sortKey="Keiluweit, Marco" sort="Keiluweit, Marco" uniqKey="Keiluweit M" first="Marco" last="Keiluweit">Marco Keiluweit</name><name sortKey="Nasse, Michael J" sort="Nasse, Michael J" uniqKey="Nasse M" first="Michael J" last="Nasse">Michael J. Nasse</name><name sortKey="Ogle, Brenda" sort="Ogle, Brenda" uniqKey="Ogle B" first="Brenda" last="Ogle">Brenda Ogle</name><name sortKey="Parkinson, Dilworth Y" sort="Parkinson, Dilworth Y" uniqKey="Parkinson D" first="Dilworth Y" last="Parkinson">Dilworth Y. Parkinson</name><name sortKey="Sedlmair, Julia" sort="Sedlmair, Julia" uniqKey="Sedlmair J" first="Julia" last="Sedlmair">Julia Sedlmair</name><name sortKey="Unger, Miriam" sort="Unger, Miriam" uniqKey="Unger M" first="Miriam" last="Unger">Miriam Unger</name></noCountry><country name="États-Unis"><region name="Californie"><name sortKey="Martin, Michael C" sort="Martin, Michael C" uniqKey="Martin M" first="Michael C" last="Martin">Michael C. Martin</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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